All skills & plugins / Scientific Agent Skills (K-Dense)

cellprofiler

Runs reproducible CellProfiler microscopy pipelines for nuclear segmentation, cell counts, and per-object fluorescence measurements. Supports image/channel manifests, headless batch execution, segmentation overlays, and measurement QC for 2D fluorescence assays.

Type: Skill by K-Dense Inc.
Catalog: Scientific Agent Skills (K-Dense)
Source: K-Dense-AI/scientific-agent-skills/skills/cellprofiler (4 files scanned)
Install and details: Agent Skills Index entry
License: MIT (SKILL.md frontmatter)
Signals: Bundled scriptsSpawns processes

Pre-approved tools

No allowed-tools or tools list in its SKILL.md, command or agent files, so the agent asks before using tools as usual.

Hooks

No hooks.

MCP servers and apps

None.

Bundled code

1 code file (Python):

cellprofiler/scripts/nuclei_assay.py

Network calls

No HTTP or socket call pattern found in the code.

Starts other programs

1 file. First match per file:

skills/cellprofiler/scripts/nuclei_assay.py:175

subprocess.run(command, stdout=log, stderr=subprocess.STDOUT, check=True)

Credentials referenced

No key, token or secret environment variable found in code or MCP config.

Static scan of commit 5f2bc03 on 2026-10-27. Signals are patterns found in the files, not a verdict: a network call can be the whole point of a skill. Read the linked lines before you decide. How the scan works.