Skill All skills & plugins / Scientific Agent Skills (K-Dense)
deepspot-m
Generates transcriptome-wide virtual spatial transcriptomics from H&E histology with DeepSpot-M. Used for predicted log1p-CPM expression from 224x224 tiles at about 20x, querying the released protein-coding gene panel by symbol, and whole-slide prediction after resolution-aware tiling with histolab.
- Type
- Skill by Ratschlab, ETH Zurich
- Catalog
- Scientific Agent Skills (K-Dense)
- Source
- K-Dense-AI/scientific-agent-skills/skills/deepspot-m (3 files scanned)
- Install and details
- Agent Skills Index entry
- License
- PolyForm-Noncommercial-1.0.0 (SKILL.md frontmatter)
- Signals
- Pre-approved shell
Pre-approved tools
Shell (any command). Tools listed in allowed-tools (or an agent's tools) can be used without a permission prompt while the skill is active, depending on your agent and settings.
| Kind | Tools |
|---|---|
| read/search | Read |
| write/edit files | WriteEdit |
| shell, any command | Bash |
Declared in deepspot-m/SKILL.md.
Hooks
No hooks.
MCP servers and apps
None.
Bundled code
No code files, only instructions and other assets.
Credentials referenced
No key, token or secret environment variable found in code or MCP config.
Static scan of commit 5f2bc03 on 2026-10-27. Signals are patterns found in the files, not a verdict: a network call can be the whole point of a skill. Read the linked lines before you decide. How the scan works.